Blockstructured Adaptive Mesh Refinement in object-oriented C++
Blockstructured Adaptive Mesh Refinement in object-oriented C++
00001 #ifndef __AMRSDS_H_ 00002 #define __AMRSDS_H_ 00003 00010 /*----------------------------- 00011 CPROTO's for people stuck with K&R compilers (ie. Sun's) 00012 ------------------------------*/ 00013 #ifndef ANSI 00014 #if defined(__STDC__) ||defined(__cplusplus)||defined(_LANGUAGE_C_PLUS_PLUS) 00015 #define ANSI 00016 #endif 00017 #endif 00018 00019 #ifdef ANSI 00020 #define CPROTO(x) x 00021 #else 00022 #define CPROTO(x) () 00023 #endif 00024 00025 #include <hdf.h> 00026 extern int AmrDebug; /* set this flag to 1 to get verbose error messages */ 00027 00028 /*@@ 00029 @header amrsds.h 00030 @date Wed Feb 28 20:30:57 1996 @author John Shalf 00031 @version 0.9a 00032 @@*/ 00033 00034 00035 /*======================================================================== 00036 Explanation of Parameters 00037 00038 Taxonomy 00039 The AMR heirarchy resembles a tree. The root of the tree is level 0 00040 and the lower levels are numbered consecutively. The nodes of this 00041 tree are "grids". A "grid" is a rectilinear array of data at a 00042 particular AMR level. At a particular level there can be multiple 00043 "steps" of the level as it evolves. The grid can be of a different 00044 size and location on every timestep. 00045 00046 AMR Parameters (the same names are used for all function calls) 00047 level: The level in the amr heirarchy, starting from 0. 00048 gridID: At a particular level, there can be multiple grids. 00049 This is an integer (starting from 0) that differentiates 00050 grids at the same level. There is no other implied meaning 00051 for this number. 00052 step: This is the current integer step for a particular 00053 level. It need not be associated with time so that the 00054 AMR file can store more than one component as successive 00055 steps in the same graph if they share the same tree structure. 00056 00057 rank: As with regular HDF, this is the number of dimensions of 00058 the data 00059 00060 dims: An n-element array of the dimensions of the data where 00061 n=the rank of the data. 00062 00063 origin: An n-element array locating the origin of the current 00064 grid with respect to the origin of the toplevel grid 00065 (n = rank of the data at top level). The resolution 00066 of the coordinates is with respect to the current level 00067 is with respect to the toplevel. ie. A 1D grid that is 00068 offset by 2 top-level grid points with respect to 00069 the toplevel origin, and has a refinement factor of 5 00070 has its origin[0]=10. 00071 00072 resolution: This is the integer refinement factor by which the 00073 current level grid has been refined with respect to the 00074 toplevel grid (ie. a refinement factor of 3 means 00075 3 grid points at this level fit in the space of one grid point 00076 at the toplevel. It is an (n+1) element array where n=rank 00077 of the toplevel grid. So each dimension can be of a different 00078 refinement factor. The last element is the refinement 00079 factor for time with respect to the toplevel. 00080 00081 realTime: Since this may not be derivable from any combination of 00082 the time resolution and level/gridID/step, then we'd best 00083 store this explicitly. Since it is a floating point number, 00084 it can't be relied upon for searching or seeking through 00085 the heirarchy, but it does provide useful information 00086 once the grid is found. 00087 ====================================================================*/ 00088 00089 00090 /*------------------------------------------------------ 00091 Name: AMRwriteData 00092 Purpose: Works just like DFSDadddata(), except it includes 00093 all of the AMR attributes as well. 00094 returns: 0 on success 00095 -1 on failure 00096 -------------------------------------------------------*/ 00097 int AMRwriteData CPROTO((char *filename, 00098 char *dataname, 00099 int32 proc, 00100 int32 level, 00101 int32 gridID, 00102 int32 step, 00103 float64 realTime, 00104 int32 rank, 00105 int32 *dims, 00106 int32 *origin, 00107 int32 *resolution, 00108 void *data)); 00109 00110 /*------------------------------------------------------ 00111 Name: AMRreadAttribs 00112 Purpose: Analogous to DFSDgetdims() but gets amr attribs 00113 as well. Can be used to step through an AMR/HDF file 00114 returns: 0 on success 00115 -1 on failure 00116 -------------------------------------------------------*/ 00117 int AMRreadAttribs CPROTO((char *filename, 00118 char *dataname, 00119 int32 *proc, 00120 int32 *level, 00121 int32 *gridID, 00122 int32 *step, 00123 float64 *realtime, 00124 int32 *rank, 00125 int32 *dims, 00126 int32 *origin, 00127 int32 *resolution)); 00128 /*--------------------------------------------------------- 00129 Name: AMRgetNumAttribs 00130 --------------------------------------------------------*/ 00131 int AMRgetNumAttribs CPROTO((char *filename)); 00132 00133 /*------------------------------------------------------ 00134 Name: AMRreadData 00135 Purpose: Identical in function to DFSDgetdata() or 00136 SDread() or SDSreadData() 00137 returns: 0 on success 00138 -1 on failure 00139 -------------------------------------------------------*/ 00140 int AMRreadData CPROTO((char *filename, 00141 int32 rank, 00142 int32 *dims, 00143 void *data)); 00144 00145 /*------------------------------------------------------ 00146 Name: AMRseek 00147 Purpose: A generally inefficient seek function for 00148 AMR-SDS files. It searches linearly through 00149 the file (hence the inefficiency) to find 00150 an SDS of the specified level,gridID, and 00151 step. You can use AMR_ANYVAL as a wildcard 00152 for any of the level, grid & step. 00153 returns: 0 on success 00154 -1 on failure 00155 Note: This can be made more efficient in the future 00156 by building a table of all grids & their associated 00157 attributes and SDS ref-numbers in memory. Then 00158 the SDSseek() can go directly to the proper SDS instead 00159 of searching linearly through the file. 00160 -------------------------------------------------------*/ 00161 int AMRseek CPROTO((char *filename, 00162 int32 level, 00163 int32 gridID, 00164 int32 step)); 00165 00166 int AMRseekTime CPROTO((char *filename, 00167 float64 realtime, 00168 char *matchtype)); 00169 00170 /* Interpolates a rectilinear dataset of a specified resolution 00171 out of the heirarchial data */ 00172 int AMRgetRegion CPROTO((char *filename, 00173 int32 level,/* get at level of detail of this level */ 00174 int32 step, /* get at this step at specified level */ 00175 int32 rank, 00176 int32 *dims, 00177 int32 *lb, 00178 int32 *ub, 00179 void *data)); 00180 00181 /* returns TRUE if the source & destination regions overlap */ 00182 int RegionOverlap CPROTO((int *rank, 00183 int32 *sourceDims, 00184 int32 *sourceOrigin, 00185 int32 *sourceResolution, 00186 int32 *destDims, 00187 int32 *destOrigin, 00188 int32 *destResolution)); 00189 00190 /* 00191 type definition for 00192 function interpolates source 00193 grid into destination grid 00194 */ 00195 typedef void (*AMRinterpolator) CPROTO((int32 *rank,/*pointer for f77 compat */ 00196 int32 *sourceDims, 00197 int32 *sourceOrigin, 00198 int32 *sourceResolution, 00199 void *sourcedata, 00200 int32 *destdims, 00201 int32 *destOrigin, 00202 int32 *destResolution, 00203 void *destdata)); 00204 00205 /* Select an interpolation function. Default=PatchReplace */ 00206 void AMRsetInterpolator CPROTO((AMRinterpolator interp)); 00207 00208 /* 00209 A Simple Patch-Replacement heirarchial interpolator 00210 It linearly interpolates data from the source Grid into 00211 the resolution of the destination grid and overwrites 00212 patches in the destination grid that it replaces. A 00213 more sophisticated interpolator would make some attempt 00214 at flux normalization (ie. interpolate the source data 00215 into the destination grid so as to minimize mismatches) 00216 */ 00217 void PatchReplace CPROTO((int32 *rank,/*pointer for f77 compat */ 00218 int32 *sourceDims, 00219 int32 *sourceOrigin, 00220 int32 *sourceResolution, 00221 void *sourcedata, 00222 int32 *destdims, 00223 int32 *destOrigin, 00224 int32 *destResolution, 00225 void *destdata)); 00226 00227 #define AMR_ANYVAL -1 00228 #endif /* __AMRSDS_H_ */
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